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Scientific Speaker Series 2024

Featured below are the presenters in the BINA Scientific Speaker series for 2024 – click on their photos to learn more about each speaker’s presentation.

Follow this link to register to attend any of the talks in the series.  Visit the Scientific Speaker Series YouTube playlist to see past presentations.

Muyinatu Bell – February 6

Abdoulaye Ndao –  February 13

Sharonda LeBlanc – February 20

AJ Hinton Jr. – February 27

Mariana De Niz – March 12th

Dayenari Caballero Rodriguez – April 9th

Michelle Digman – May 14th

Ivy Xiong and Mariana De Niz – May 21st

Carlos Bustamante – September 10

Pablo Ariel  – September 17

Luisa Iruela-Arispe – October 1

Esteban Miglietta – October 8

Guillermina San Juan – October 15

Scientific Speaker Panel – December 10

Muyinatu Bell – February 6

John C. Malone Associate Professor

LinkedIn
Twitter

Watch on YouTube: https://youtu.be/pw3W6_4pM24

Presentation Title: Listening to the Sound of Light to Guide Surgeries

Abstract:
Photoacoustic imaging offers “x-ray vision” to see beyond tool tips and underneath tissue during surgical procedures, yet no ionizing x-rays are required. Instead, optical fibers and acoustic receivers enable photoacoustic sensing of major structures – like blood vessels and nerves – that are otherwise hidden from view. The entire process is initiated by delivering laser pulses through optical fibers to illuminate regions of interest, causing an acoustic response that is detectable with ultrasound transducers. Beamforming is then implemented to create a photoacoustic image. In this talk, I will highlight novel imaging system implementations pioneered by the Photoacoustic & Ultrasonic Systems Engineering (PULSE) Lab to enable an exciting new frontier of photoacoustic-guided surgery. This new paradigm has the potential to eliminate the occurrence of major complications (e.g., excessive bleeding, paralysis, accidental patient death) during a wide range of delicate surgeries and procedures, including neurosurgery, cardiac catheter-based interventions, liver surgery, spinal fusion surgery, hysterectomies, biopsies, and teleoperative robotic surgeries. Challenges with non-existent laser safety limits and opportunities for photoacoustic imaging with flexible ultrasound transducers will also be discussed.

Abdoulaye Ndao –  February 13

Nano-Devices and Applied Optics Lab, UC San Diego

LinkedIn
Twitter

Watch on YouTube: https://youtu.be/mnvIa4Xlim8

Presentation Title: Symmetry and Topology in Photonics Nanostructures for sensing and imaging applications

Abstract: The quest for smaller, lighter, and more efficient optical components usually comes at the price of reduced functionalities. In this talk, I will provide an overview of how topological approaches to control light-matter interaction enable novel photonic devices with unique features and enhanced performance. I will discuss our recent breakthrough in demonstrating the first topological light source that unidirectionally outcouples to a waveguide from magnetic biased photonic crystal cavities of arbitrary shape. I will also discuss singularities of non -Hermitian systems and their application in biology and healthcare by detecting attomolar concentrations of anti-immunoglobulin G. In the last part of the talk, I will present a premier achromatic broadband metalens that is strategically engineered to span an octave bandwidth with high efficiency. Such devices will be suitable for free space and integrated optics and pave the way towards more complex and versatile systems with applications in high-capacity classical and quantum communications, as well as sensing.

Sharonda LeBlanc – February 20

Assistant Professor of Physics at North Carolina State University

LinkedIn

Watch on YouTube: https://youtu.be/7GL8AsE7riU

Presentation Title: Revealing biological pathways with time-resolved fluorescence

Abstract:
Large numbers of inanimate biomolecular machines organize across space and time and undergo drastic changes in shape to carry out complex biological processes. The detailed molecular mechanisms of these tightly regulated pathways are rarely known but driven by series of highly coordinated protein-protein and protein-nucleic acid interactions. Catching these transient events in action requires fast detection and high sensitivity, which is offered by time-resolved fluorescence methods. I will discuss single molecule time-resolved fluorescence microscopy and spectroscopy as a tool to explore in real time the interactions and structural rearrangements that drive specific pathways. We are currently studying the mechanisms of ribosome assembly, SARS-CoV-2 viral RNA processing, and DNA mismatch repair. We have designed assays for simultaneous FRET and FCS measurements to investigate several fundamental questions. In my talk, I will present recent findings that reveal the dynamic interactions between essential enzymes, assembly factors, and nucleic acids. We aim to completely characterize the impact of mutations on the molecular function of enzymes to understand how complex diseases develop at the molecular level and to identify new therapeutic targets.

AJ Hinton Jr. – February 27

Assistant Professor, Department of Molecular Physiology and Biophysics, Vanderbilt School of Medicine Basic Sciences

LinkedIn
Twitter

Watch on YouTube: https://youtu.be/4z6jvMzGqv8

Presentation Title: The role of MICOS and MERCs – That is the Question

Abstract:

Mitochondria-ER contact sites (MERCs) and the Mitochondrial Contact Site and Cristae Organizing System (MICOS) are two distinct areas of study for mitochondria. MERCs are specialized regions where the outer mitochondrial membrane comes into close proximity with the endoplasmic reticulum (ER), a network of membranes involved in lipid synthesis, protein folding, and calcium storage. MICOS (Mitochondrial Contact Site and Cristae Organizing System) is a complex of proteins that maintain the cristae structure, the inner mitochondria membrane, for maximal oxidative phosphorylation. Emerging evidence suggests that preserving the integrity and function of MERCs and the MICOS complex could have potential therapeutic implications for mitigating age-related cellular decline. This talk explores how in 3D electron microscopy both of these factors can be considered and future avenues.

Mariana De Niz – March 12th

Research Assistant Professor of Cell and Developmental Biology, Northwestern University

Northwestern About Page
LinkedIn
Twitter

Watch on YouTube: https://www.youtube.com/watch?v=4Zbb0YU5d4Y

Presentation Title: Investigating host-pathogen interactions at the vascular interface: insights from imaging approaches

Abstract: During my career, I have focused on the use of microscopy to study of host-pathogen interactions, specifically in the field of parasitology. My work has mostly focused on understanding how Plasmodium spp. (causative of malaria) and Trypanosoma spp. (causative of sleeping sickness or nagana) interact with the mammalian hosts at the vascular endothelium. Plasmodium spp. are intracellular parasites with a complex life cycle that includes an insect vector (female Anopheles mosquitoes) and a vertebrate host. Similarly, Trypanosoma spp. are extracellular parasites characterised by various unique features such as a flagellum which makes them extraordinary swimmers within different anatomical locations of the host. Like Plasmodium spp., Trypanosomes also have complex life cycles including tsetse flies, and vertebrate hosts.
Upon infection via the bite of an infected vector, both parasites are able to move from the site of injection at the skin, to the blood vasculature. Parasite interactions with the host blood vasculature are central to organ-specific and systemic pathology, and to tropism of the parasite to different extravascular host niches. Over the last 13 years, I have used, established and developed different microscopy-based tools to understand these interactions. Due to the nature of my work, which spans sub cellular structures in microorganisms, to whole organisms, this has allowed me to image truly across scales, from electron and atomic force microscopy, to in toto imaging of whole organisms. Moreover, later in my career, I have been able to combine these imaging tools with my keen interest in AI and mathematical modelling, to understand parasite motility within the host. During my talk I will focus on the achievements and challenges of imaging host-pathogen interactions, and the future directions I envisage in this work.

Dayenari Caballero Rodriguez – April 9th

Independent Data Scientist for the Smithsonian Tropical Research Institute

ResearchGate
LinkedIn

Watch on YouTube: https://www.youtube.com/watch?v=frs_0navJCQ

Presentation Title: Digital palynology and environmental studies: past, present and future.

Abstract: Pollen grains are microscopic structures produced by plants that evolved to transport genetic material for reproductive purposes. Because their journey is often harsh, the pollen grains developed a tough coating that protects the genetic material from desiccation and degradation. This coverage is so efficient that it can be preserved for thousands and even millions of years. The morphological characteristics of each grain reveal clues about the parental plant that produced them. Therefore, by looking at pollen assemblages preserved in the geological record, it is possible to make assumptions about the environment in which they were produced, and these environmental patterns can be tracked across time and space. Through these analyzes we can make inferences about climate change, the stability of ecosystems, ecological interactions and even patterns of human intervention in landscapes.
Historically, counting pollen has been a difficult and time-consuming task, but new microscopy technologies and the development of accessible artificial intelligence can substantially improve this process through automatic image recognition. This project requires training a strong AI capable of recognizing among the variety of pollen grains present in ecosystems. Since a model is only as good as the data that feeds it, the PALYIM (Palynology Imaging) project brought together a team of palynologists to take hundreds of thousands of digital images, through different microscopy techniques, to generate a training set that will take the palynology to a whole new level.

Michelle Digman – May 14th

Associate Professor at UC Irvine, Co-founder of Embryologic

Image Credit: UCI News
LinkedIn

Watch on YouTube: https://youtu.be/fVQ_3iIQmnI?feature=shared

Presentation Title: Biophysical Characterization of Cancer Metabolism: Multiparametric Imaging and Phenotypic Tracking in Mitochondrial Dynamics

Authors: Michelle A. Digman, Giulia Tedeschi, Lorenzo Scipioni, Austin E. Lefebvre, Francesco Palomba.
Department of Biomedical Engineering and the Laboratory for Fluorescence Dynamics, University of California Irvine, Irvine, CA, USA.

Abstract: The reorganization and distribution of mitochondria have been extensively examined within neuronal cells, evidencing their critical role in meeting localized bioenergetic needs and facilitating the removal of impaired or malfunctioning mitochondria1,2. The influence of mitochondrial spatial dynamics within cancer cells, however, remains largely uncharted territory. To investigate these complex and nuanced interactions and their impact on cellular functions, we developed and applied advanced imaging techniques to monitor mitochondrial movement, assess their functionality, and understand their contribution to the overall metabolic state of the cell. We have created a user input-independent mitochondria tracker capable of analyzing mitochondrial dynamics at sub-pixel resolutions. Our software, called “Mitometer” (available at GitHub)3, is capable of tracking individual mitochondria in timelapse fluorescence images, and can furthermore detect fission and fusion dynamics between adjacent mitochondria4. Moreover, our research involves the multiplexing of various imaging techniques, including the phasor approach to fluorescence lifetime Imaging microscopy (FLIM) measurements of NADH, spectral phasors, and second harmonic generation (SHG) with Phasor analysis of Local Image Correlation Spectroscopy (PLICS). These advanced imaging approaches offer a comprehensive understanding of mitochondrial behavior and metabolic signatures, providing insights into how cancer cells exploit unique mitochondrial populations to facilitate their metastatic dissemination. By further evaluating the spheroids-extracellular matrix interaction using SHG with PLICS, our research aims to characterize the cellular microenvironment and collagen remodeling in breast cancer spheroids. These comprehensive methods not only enhance our understanding of cancer cell behavior but also hold the potential to identify novel therapeutic targets for disrupting the metastatic process. Overall, our work aims to unravel the intricate relationship between mitochondrial dynamics and cancer progression, potentially paving the way for targeted therapeutic interventions to impede metastatic spread.

References:
1 Baloh, R. H. Mitochondrial Dynamics and Peripheral Neuropathy. The Neuroscientist, 14(1):12-18, 2008.
2 Westermann, B.. Mitochondrial fusion and fission in cell life and death. Nature Reviews Molecular Cell Biology, 11(12):872-884, 2010.
3 https://github.com/aelefebv/Mitometer
4 Lefebvre AEYT, Ma D, Kessenbrock K, Lawson DA, Digman MA. Automated segmentation and tracking of mitochondria in live-cell time-lapse images. Nat Methods. 2021; 18(9): 1091-1102.

Ivy Xiong and Mariana De Niz – May 21st

Ivy Xiong – University of California, Los Angeles

Personal Website

Mariana De Niz – Research Assistant Professor of Cell and Developmental Biology, Northwestern University

Northwestern About Page
LinkedIn
Twitter

Watch on YouTube: https://youtu.be/ldyHrlfBpwo?feature=shared

Presentation Title: Future directions after the LFD course: application and impact

Abstract: Mariana De Niz is a Research Assistant Professor at Northwestern University, where she is also the Nikon Imaging Center Manager having previously done her PhD and postdoctoral work on host-pathogen interactions, and Ivy Xiong is a postdoctoral fellow at UCLA where she focuses on the study of dynamic regulation in health and disease. Both scientists received BINA support to attend the LFD course in 2023 at the University of California at Irvine. Their presentation will focus on their research, how their attendance at the LFD course impacted their work, and the importance of BINA in promoting career development and global access to infrastructure and expertise.

Carlos Bustamante – September 10

Howard Hughes Medical Institute Investigator
Professor of Molecular & Cell Biology, Physics, and Chemistry
University of California, Berkeley

Personal Lab Page

Watch on YouTube! – English
Watch on YouTube! – Spanish

Presentation Title: Power at the Nanoscale: Speed, Strength and Efficiency in Biological Motors

Abstract: The cell is not just a small bag with a concentrated solution of proteins and nucleic
acids undergoing second order reactions. Cells have polarity, many cellular processes need to be directional, and these cannot occur by simple diffusion between reactants. Instead, the cell uses tiny nanoscopic devices that function as
molecular motors. I will describe some of the molecular motors that we are studying in our laboratory as well as the methods we use to study them. One of them is a packaging motor that sits at the base of a capsid of a bacteriophage and whose function is to package the DNA of the virus inside that capsid, while burning ATP. I will show how we use methods of single molecule manipulation to study these motors. I will then make a detour to present one unique feature of molecular motors: their amazing thermodynamic efficiency. I will discuss how we are beginning to investigate the origin of this efficiency and how we plan to test some new theories that have recently been formulated in the area of energy dissipation. Finally, I will comeback to the study of the packaging motor and propose and show how to use single molecule methods to unravel the mechanism of operation of this motor.

Pablo Ariel  – September 17

Associate Professor
Director of the Microscopy Services Laboratory
Department of Pathology and Laboratory Medicine
University of North Carolina at Chapel Hill

Linkedin
Lab website

Watch on YouTube! – English
Watch on YouTube! – Spanish

Presentation Title: Better microscopy for better science

Abstract: As a member of a microscopy core facility, my mission is to help other people with their research. Over the last decade in this role I have run into several persistent microscopy myths, which inevitably lead to poor science. Among these myths are that microscopy is not quantitative, that controls are optional, that statistics are optional, that less is more when reporting methods, and that colocalization analysis is easy. In my talk I will debunk these myths and describe how to maximize the impact of a career focused on helping others with their research, using microscopy and image analysis.

Luisa Iruela-Arispe – October 1

Professor and Chair of the Department of Cell and Developmental Biology at Northwestern University in Chicago

ORCiD

Watch on YouTube! – English
Watch on YouTube! – Spanish

Presentation Title: Macrophage – Endothelial interactions in the vascular wall

Abstract: Leukocytes and endothelial cells frequently cooperate to resolve inflammatory events. In most cases, these interactions are transient in nature and triggered by immunological insults. Here, we report that in areas of disturbed blood flow, aortic endothelial cells permanently and intimately associate with a population of specialized macrophages that are recruited at birth from the closing ductus arteriosus and share the luminal surface with the endothelium becoming interwoven in the tunica intima. Anatomical changes that affect hemodynamics, like in patent ductus arteriosus, alter macrophage seeding to coincide with regions of disturbed flow. Aortic resident macrophages expand in situ via direct cell renewal. Induced-depletion of intimal macrophages led to thrombin-mediated endothelial cell contraction, progressive fibrin accumulation and formation of microthrombi that, once dislodged, caused blockade of vessels in several organs. Together the findings revealed that intravascular resident macrophages are essential to regulate thrombin activity and clear fibrin deposits in regions of disturbed blood flow.

Esteban Miglietta – October 8

Postdoctoral Associate at the Cimini Lab of the Imaging Platform, Broad Institute of MIT & Harvard

ORCiD

Watch on YouTube! – English
Watch on YouTube! – Spanish

Presentation Title: Judging cells by their looks: building a career path supporting research with quantitative bioimage analysis

Abstract: In this talk, I will share my career path, first from wet lab neurobiology to microscopy core facility work, with an unexpected detour studying antibody response in COVID-19 vaccines in Argentina, and finally to training as a bioimage analyst in a unique postdoctoral training program.
I will also showcase the work of the Cimini lab in maintaining, developing and promoting the use of CellProfiler and other open tools and datasets, as well as the undergoing translation efforts to facilitate access to training materials for non-English speaking populations, especially in Latin America.
Finally, I will discuss a recent collaboration using high-throughput imaging to characterize the localization pattern of 3,448 missense variants of 1,269 proteins involved in diverse Mendelian disorders and tumorigenesis. This approach allowed us to propose protein mislocalization as a widespread consequence of genetic variation that can help explain pleiotropy, disease severity and provide insights on variants of uncertain unknown significance.

Guillermina San Juan – October 15

Assistant professor of Physics EPF Lausanne

Lab website: https://www.epfl.ch/labs/lpl/
Lab Instagram: @livingpatterns_lpl24
Twitter: @guille_rochelle

Watch on YouTube! – English
Watch on YouTube! – Spanish

Presentation Title: Imaging living patterns to link microscopic interactions with biological function

Abstract: Living matter relies on countless molecular interactions to execute the processes that keep us alive. In most biological contexts, detailed knowledge of these molecular interactions is yet to be translated into understanding of how they give rise to organism scale physiological and developmental processes. In my talk I will discuss how microscopy imaging data can be translated into meaningful measurements that describe the macroscopic patterns and dynamics of a biological system. Specifically, I will focus on how we apply this approach to the problem of flow generation by arrays of cilia and swimming cells. This integrated view that seeks to link sub-cellular patterns with macroscopic function will enable the discovery of mesoscopic laws that describe and predict the dynamics of essential physiological and developmental processes driven by physical forces, such as tissue morphogenesis and organism motility. Beyond their biological significance these living systems provide accessible experimental platforms to explore the multi-scale physics of pattern formation.

Scientific Speaker Panel – December 10

Pina Colarusso – Training & Education Working Group
Judith Lacoste – Quality Control & Data Management Working Group
Genevieve Laprade – Early Career Working Group
Mariana De Niz – Training & Education Working Group, Communications Working Group, & Diversity, Equality, & Inclusion Working Group
Rhonda Powell – Training & Education Working Group

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