Training & Education Resources
Due to the urgent need for virtual training materials as a result of the COVID19 pandemic, we are posting this preliminary collection of links. This list will become more complete as we receive, and have vetted, more materials. If you want to speed things up you are welcome to join the BINA Training and Education Working Group.
If you have a resource to share – submit here!
Mucus Matters - Mindy Engevik
Latest Submisions
User Training
Art of Tissue Clearing from Zeiss
PDF document providing "insights and theory on optical tissue clearing. The author does not intend to replace any of the excellent and comprehensive reviews that recently appeared on...
Online Courses
Rosalind – learning bioinformatics and programming through problem solving
Rosalind is a platform for learning bioinformatics and programming through problem solving.
Online Courses
Bio-image Analysis Notebooks
This collection of Python jupyter notebooks are written for Python beginners who are interested in analyzing three dimensional images of cells and tissues acquired using modern...
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Core Management
ADDED VALUE OF OPEN ACCESS IMAGING CORE FACILITIES
Document generated by Global Bioimaging to to highlight the benefits of Core Facilities “for researchers, imaging communities, industry and national funders”.
User Training
Allen Cell Structure Segmenter Tutorial
To assist biologists and computational scientists with using the Allen Cell Structure Segmenter, Allen Institute for Cell Science scientist, Melissa Hendershott, walks users through...
Online Courses
Andor Complete Microscopy Training Course
Series of videos covering basic microscopy through advanced techniques.
Reference
Atlas of Bacterial & Archaeal Cell Structure
A comprehensive series of mixed-media (linked text and short videos) pages that guide you through the highest resolution world of Bacterial & Archaeal Cell Structure as observed...
User Training
BioImage Informatics Index (Biii)
Many tools for BioImage Analysis are already available but information about these tools is non-uniform and often focuses on technicalities about the methods implemented rather than...
User Training
BioImage.IO
BioImage.IO is a collaborative effort to bring AI models to the bioimaging community.
Online Courses
BioImageAnalysis 2020
Tutorials on image processing/analysis in Fiji/ImageJ from Robert Haase
User Training
Center for Open Bioimage Analysis
Excellent source of how-to videos on image analysis with Cell Profiler
User Training
Center for Open Bioimage Analysis YouTube Channel
COBA’s mission is to serve the cell biology community’s growing need for sophisticated software for light microscopy image analysis. We are a collaboration between both the ImageJ...